Genome-wide identification of NAC transcription factors in and their expression dynamics during leaf aging

Ahmad Z, Ramakrishnan M, Wang C, Rehman S, Shahzad A, Wei Q (2024, Available online) Unravelling the role of WRKY transcription factors in leaf senescence: genetic and molecular insights. J Adv Res. https://doi.org/10.1016/j.jare.2024.09.02

Bailey TL, Johnson J, Grant CE, Noble WS (2015) The MEME suite. Nucl Acids Res 43:W39-49

Article  CAS  PubMed  PubMed Central  Google Scholar 

Balazadeh S, Siddiqui H, Allu AD, Matallana-Ramirez LP, Caldana C, Mehrnia M, Zanor MI, Köhler B, Mueller-Roeber B (2010) A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. Plant J 62:250–264

Article  CAS  PubMed  Google Scholar 

Bengoa Luoni S, Astigueta FH, Nicosia S, Moschen S, Fernandez P, Heinz R (2019) Transcription factors associated with leaf senescence in crops. Plants (Basel) 8:411

PubMed  Google Scholar 

Cao J, Liu H, Tan S, Li Z (2023) Transcription factors-regulated leaf senescence: current knowledge, challenges and approaches. Int J Mol Sci 24:9245

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chang W, Zhao H, Chen H, Jiao G, Yu J, Wang B, Xia H, Meng B, Li X, Yu M et al (2024) Transcription factor NtNAC56 regulates Jasmonic acid-induced leaf senescence in tobacco. Plant Physiol 195:1925–1940

Article  CAS  PubMed  Google Scholar 

Chen H, Wang JP, Liu H, Li H, Lin Y-CJ, Shi R, Yang C, Gao J, Zhou C, Li Q et al (2019) Hierarchical transcription factor and chromatin binding network for wood formation in black cottonwood (Populus trichocarpa). Plant Cell 31:602–626

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R (2020) TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant 13:1194–1202

Article  CAS  PubMed  Google Scholar 

Chen Z, Lu X, Li Q, Li T, Zhu L, Ma Q, Wang J, Lan W, Ren J (2021) Systematic analysis of MYB gene family in Acer rubrum and functional characterization of ArMYB89 in regulating anthocyanin biosynthesis. J Exp Bot 72:6319–6335

Article  CAS  PubMed  Google Scholar 

Chen Y, Feng P, Tang B, Hu Z, Xie Q, Zhou S, Chen G (2022) The AP2/ERF transcription factor SlERF.F5 functions in leaf senescence in tomato. Plant Cell Rep 41:1181–1195

Article  CAS  PubMed  Google Scholar 

Chen Q, Yan J, Tong T, Zhao P, Wang S, Zhou N, Cui X, Dai M, Jiang YQ, Yang B (2023) ANAC087 transcription factor positively regulates age-dependent leaf senescence through modulating the expression of multiple target genes in Arabidopsis. J Integr Plant Biol 65:967–984

Article  CAS  PubMed  Google Scholar 

Effah Z, Li L, Xie J, Karikari B, Liu C, Xu A, Zeng M (2022) Transcriptome profiling reveals major structural genes, transcription factors and biosynthetic pathways involved in leaf senescence and nitrogen remobilization in rainfed spring wheat under different nitrogen fertilization rates. Genomics 114:110271

Article  CAS  PubMed  Google Scholar 

Ernst HA, Olsen AN, Larsen S, Lo Leggio L (2004) Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. EMBO Rep 5:297–303

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fan Z, Wei W, Tan X, Shan W, Kuang J, Lu W, Su X, Lakshmanan P, Lin H, Chen J et al (2021) A NAC transcription factor BrNAC087 is involved in gibberellin-delayed leaf senescence in Chinese flowering cabbage. Postharvest Biol Technol 181:111673

Article  CAS  Google Scholar 

Fujita M, Fujita Y, Maruyama K, Seki M, Hiratsu K, Ohme-Takagi M, Tran LS, Yamaguchi-Shinozaki K, Shinozaki K (2004) A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J 39:863–876

Article  CAS  PubMed  Google Scholar 

Garapati P, Xue GP, Munné-Bosch S, Balazadeh S (2015) Transcription factor ATAF1 in arabidopsis promotes senescence by direct regulation of key chloroplast maintenance and senescence transcriptional cascades. Plant Physiol 168:1122–1139

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gong X, Zhao L, Song X, Lin Z, Gu B, Yan J, Zhang S, Tao S, Huang XJBPB (2019) Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri). BMC Plant Biol 19:161

Article  PubMed  PubMed Central  Google Scholar 

Guérin C, Roche J, Allard V, Ravel C, Mouzeyar S, Bouzidi MF (2019) Genome-wide analysis, expansion and expression of the NAC family under drought and heat stresses in bread wheat (T. aestivum L.). PLoS ONE 14:0213390

Article  Google Scholar 

Guo Y, Gan S (2006) AtNAP, a NAC family transcription factor, has an important role in leaf senescence. Plant J 46:601–612

Article  CAS  PubMed  Google Scholar 

Guo F, Liu S, Zhang C, Dong T, Meng X, Zhu M (2022) Genome-wide systematic survey and analysis of NAC transcription factor family and their response to abiotic stress in sweetpotato. Sci Hortic 299:111048

Article  CAS  Google Scholar 

Hickman R, Hill C, Penfold CA, Breeze E, Bowden L, Moore JD, Zhang P, Jackson A, Cooke E, Bewicke-Copley F et al (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. Plant J 75:26–39

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hong Y, Zhang H, Huang L, Li D, Song F (2016) Overexpression of a stress-responsive NAC transcription factor gene ONAC022 improves drought and salt tolerance in rice. Front Plant Sci 7:4

Article  PubMed  PubMed Central  Google Scholar 

Hou X, Zhang H, Liu S, Wang X, Zhang Y, Meng Y, Luo D, Chen R (2020) The NAC transcription factor CaNAC064 is a regulator of cold stress tolerance in peppers. Plant Sci 291:110346

Article  CAS  PubMed  Google Scholar 

Huysmans M, Buono RA, Skorzinski N, Radio MC, De Winter F, Parizot B, Mertens J, Karimi M, Fendrych M, Nowack MK (2018) NAC transcription factors ANAC087 and ANAC046 control distinct aspects of programmed cell death in the Arabidopsis columella and lateral root cap. Plant Cell 30:2197–2213

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ju Y, Yue X, Min Z, Wang X, Fang Y, Zhang J (2020) VvNAC17, a novel stress-responsive grapevine (Vitis vinifera L.) NAC transcription factor, increases sensitivity to abscisic acid and enhances salinity, freezing, and drought tolerance in transgenic Arabidopsis. Plant Physiol Biochem 146:98–111

Article  CAS  PubMed  Google Scholar 

Kamranfar I, Xue GP, Tohge T, Sedaghatmehr M, Fernie AR, Balazadeh S, Mueller-Roeber B (2018) Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence. New Phytol 218:1543–1557

Article  CAS  PubMed  Google Scholar 

Kim YS, Kim SG, Park JE, Park HY, Lim MH, Chua NH, Park CM (2006) A membrane-bound NAC transcription factor regulates cell division in Arabidopsis. Plant Cell 18:3132–3144

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kim HJ, Nam HG, Lim PO (2016a) Regulatory network of NAC transcription factors in leaf senescence. Curr Opin Plant Biol 33:48–56

Article  PubMed  Google Scholar 

Kim J, Woo Hye R, Nam Hong G (2016b) Toward systems understanding of leaf senescence: an integrated multi-omics perspective on leaf senescence research. Mol Plant 9:813–825

Article  CAS  PubMed  Google Scholar 

Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549

Article  CAS  PubMed  PubMed Central  Google Scholar 

Le DT, Nishiyama R, Watanabe Y, Mochida K, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS (2011) Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress. DNA Res 18:263

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