Abbott DW, Boraston AB (2008) Structural biology of pectin degradation by Enterobacteriaceae. Microbiol Mol Biol Rev 72:301–316. https://doi.org/10.1128/MMBR.00038-07

Article  PubMed  PubMed Central  CAS  Google Scholar 

Ahmad I, Arif M, Xu M, Zhang J, Ding Y, Lyu F (2023) Therapeutic values and nutraceutical properties of shiitake mushroom (Lentinula edodes): a review. Trends Food SCI Tech 134:123–135. https://doi.org/10.1016/j.tifs.2023.03.007

Article  CAS  Google Scholar 

Alhalmi A, Alzobaidi N, Abdulrahman A (2020) Intracellular protein biosynthesis: a review. Asian J Biochem Genet Mol Biol 5:10–18. https://doi.org/10.9734/AJBGMB/2020/v5i230125

Article  Google Scholar 

Alzuwaid NT, Sissons M, Laddomada B, Fellows CM (2019) Nutritional and functional properties of durum wheat bran protein concentrate. Cereal Chem 97:304–315. https://doi.org/10.1002/cche.10246

Article  CAS  Google Scholar 

Annepu SK, Sharma VP, Barh A, Kamal S, Shirur M, Kumar S, Bairwa RK, Gupta S, Gupta M, Dutta U, Summuna B, Gupta D, Kumar R (2023) Influence of heat treatment and solid-state fermentation on the lignocellulosic fractions of substrates supporting Lentinula edodes (Berk.) Pegler cultivation: implications for commercial production. Fermentation 9:130. https://doi.org/10.3390/fermentation9020130

Article  CAS  Google Scholar 

Aranda-Rivera AK, Cruz-Gregorio A, Arancibia-Hernández YL, Hernández-Cruz EY, Pedraza-Chaverri J (2022) RONS and oxidative stress: an overview of basic concepts. Oxygen 2:437–478. https://doi.org/10.3390/oxygen2040030

Article  CAS  Google Scholar 

Auxier B, Czárán TL, Aanen DK (2022) Modeling the consequences of the dikaryotic life cycle of mushroom-forming fungi on genomic conflict. Elife 11:e75917. https://doi.org/10.7554/eLife.75917

Article  PubMed  PubMed Central  CAS  Google Scholar 

Baars JJP, Scholtmeijer K, Sonnenberg ASM, van Peer AV (2020) Critical factors involved in primordia building in Agaricus bisporus: a review. Molecules 25:2984. https://doi.org/10.3390/molecules25132984

Article  PubMed  PubMed Central  CAS  Google Scholar 

Bianchi F, Van’t Klooster JS, Ruiz SJ, Poolman B (2019) Regulation of amino acid transport in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 83:e00024-19. https://doi.org/10.1128/MMBR.00024-19

Article  PubMed  PubMed Central  CAS  Google Scholar 

Borkovich KA, Ebbole DJ (2010) Cellular and molecular biology of filamentous fungi. ASM Press, Washington

Book  Google Scholar 

Bostyn SJR (2021) Towards a fair scope of protection for plant breeders’ rights in an era of new breeding techniques: proposals for a modernization of the essentially derived variety concept. Agronomy 11:1511. https://doi.org/10.3390/agronomy11081511

Article  CAS  Google Scholar 

Brauer VS, Pessoni AM, Freitas MS, Cavalcanti-Neto MP, Ries LNA, Almeida F (2023) Chitin biosynthesis in Aspergillus species. J Fungi 9:89. https://doi.org/10.3390/jof9010089

Article  CAS  Google Scholar 

Ceccaroli P, Buffalini M, Saltarelli R, Barbieri E, Polidori E, Ottonello S, Kohler A, Tisserant E, Martin F, Stocchi V (2011) Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum. New Phytol 189:751–764. https://doi.org/10.1111/j.1469-8137.2010.03520.x

Article  PubMed  CAS  Google Scholar 

Chandel NS (2021) Amino acid metabolism. Cold Spring Harb Perspect Biol 13:a040584. https://doi.org/10.1101/cshperspect.a040584

Article  PubMed  PubMed Central  CAS  Google Scholar 

Chang ST, Miles PG (2004) Mushrooms: cultivation, nutritional value, medicinal effect and environmental impact. CRC Press, Boca Raton

Google Scholar 

Chen AW (2001) Cultivation of Lentinula edodes on synthetic logs. Mushroom Grower’s Newsl 10:3–9

Google Scholar 

Chen L, Gong Y, Cai Y, Liu W, Zhou Y, Xiao Y, Xu Z, Liu Y, Lei X, Wang G, Guo M, Ma X, Bian Y (2016) Genome sequence of the edible cultivated mushroom Lentinula edodes (shiitake) reveals insights into lignocellulose degradation. PLoS One 11:e0160336. https://doi.org/10.1371/journal.pone.0160336

Article  PubMed  PubMed Central  CAS  Google Scholar 

Chen J, Yang S, Li Y, Ziwen X, Zhang P, Song Q, Yao Y, Pei H (2023) De novo nucleotide biosynthetic pathway and cancer. Genes Dis 10:2331–2338. https://doi.org/10.1016/j.gendis.2022.04.018

Article  PubMed  CAS  Google Scholar 

Chroumpi T, Mäkelä MR, de Vries RP (2020) Engineering of primary carbon metabolism in filamentous fungi. Biotechnol Adv 43:107551. https://doi.org/10.1016/j.biotechadv.2020.107551

Article  PubMed  CAS  Google Scholar 

Del Cerro C, Erickson E, Dong T, Wong AR, Eder EK, Purvine SO, Mitchell HD, Weitz KK, Markillie LM, Burnet MC, Hoyt DW, Chu RK, Cheng JF, Ramirez KJ, Katahira R, Xiong W, Himmel ME, Subramanian V, Linger JG, Salvachúa D (2021) Intracellular pathways for lignin catabolism in white-rot fungi. Proc Natl Acad Sci U S A 118:e2017381118. https://doi.org/10.1073/pnas.2017381118

Article  PubMed  PubMed Central  CAS  Google Scholar 

Deng S, Zhang M, Li A, Ren L, Zhang Y, Zhao H, Zhang Y, Song C, Han R, Tan Q, Chu Y, Chen H (2024) Investigation of sample size estimation for measuring quantitative characteristics in DUS testing of shiitake mushrooms. Agronomy 14:1130. https://doi.org/10.3390/agronomy14061130

Article  Google Scholar 

Desisa B, Muleta D, Dejene T, Jida M, Goshu A, Martin-Pinto P (2023) Substrate optimization for shiitake (Lentinula edodes (Berk.) Pegler) mushroom production in Ethiopia. J Fungi 9:811. https://doi.org/10.3390/jof9080811

Article  CAS  Google Scholar 

Dong Y, Miao R, Feng R, Wang T, Yan J, Zhao X, Han X, Gan Y, Lin J, Li Y, Gan B, Zhao J (2022) Edible and medicinal fungi breeding techniques, a review: current status and future prospects. Curr Res Food Sci 5:2070–2080. https://doi.org/10.1016/j.crfs.2022.09.002

Article  PubMed  PubMed Central  CAS  Google Scholar 

Du JR, Wang SX, Yan D, Gao Q, Fan YY, Yu ZH, Liu Y (2023) Analyses of melanin synthesis pathway and the related genes in Lentinula edodes based on whole genome sequence comparison. Mycosystema 42:1114–1128. https://doi.org/10.13346/j.mycosystema.220309

Article  Google Scholar 

Fang J (2024) Breeding 4.0: the breeding revolution of genetic information integration and editing. Mol Plant Breed 15. https://doi.org/10.5376/mpb.2024.15.0003

Fukuda M, Harada Y, Imahori S, Fukumasa-Nakai Y, Hayashi Y (1995) Inheritance of mitochondrial DNA in sexual crosses and protoplast cell fusions in Lentinula edodes. Curr Genet 27:550–554. https://doi.org/10.1007/BF00314446

Article  PubMed  CAS  Google Scholar 

Galganska H, Karachitos A, Wojtkowska M, Stobienia O, Budzinska M, Kmita H (2010) Communication between mitochondria and nucleus: putative role for VDAC in reduction/oxidation mechanism. Biochim Biophys Acta 1797:1276–1280. https://doi.org/10.1016/j.bbabio.2010.02.004

Article  PubMed  CAS  Google Scholar 

Gehrmann T, Pelkmans JF, Ohm RA, Vos AM, Sonnenberg ASM, Baars JJP, Wösten HAB, Reinders MJT, Abeel T (2018) Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs. Proc Natl Acad Sci U S A 115:4429–4434. https://doi.org/10.1073/pnas.1721381115

Article  PubMed  PubMed Central  CAS  Google Scholar 

Gong WB, Li L, Zhou Y, Bian YB, Kwan HS, Cheung MK, Xiao Y (2016) Genetic dissection of fruiting body-related traits using quantitative trait loci mapping in Lentinula edodes. Appl Microbiol Biotechnol 100:5437–5452. https://doi.org/10.1007/s00253-016-7347-5

Article  PubMed  CAS  Google Scholar 

Gonzalez JM, Aranda B (2023) Microbial growth under limiting conditions-future perspectives. Microorganisms 11:1641. https://doi.org/10.3390/microorganisms11071641

Article  PubMed  PubMed Central  Google Scholar 

González-Hernández RA, Valdez-Cruz NA, Macías-Rubalcava ML, Trujillo-Roldán MA (2023) Overview of fungal terpene synthases and their regulation. World J Microbiol Biotechnol 39:194. https://doi.org/10.1007/s11274-023-03635-y