CDCA: Community detection in RNA-seq data using centrality-based approach

Abraham A, Hassanien A and Snášel V 2009 Computational social network analysis: trends, tools and research advances (Springer)

Akiibinu MO, Ogundahunsi OA and Ogunyemi EO 2012 Inter-relationship of plasma markers of oxidative stress and thyroid hormones in schizophrenics. BMC Res. Notes 5 1–5

Article  Google Scholar 

Andreou D, Jørgensen KN, Nerland S, et al. 2022 Herpes simplex virus 1 infection on grey matter and general intelligence in severe mental illness. Transl. Psychiatry 12 1–9

Article  Google Scholar 

Ashok AH, Marques TR, Jauhar S, et al. 2017 The dopamine hypothesis of bipolar affective disorder: the state of the art and implications for treatment. Mol. Psychiatry 22 666–679

Article  CAS  PubMed  PubMed Central  Google Scholar 

Asuero AG, Sayago A and González A 2006 The correlation coefficient: An overview. Crit. Rev. Anal. Chem. 36 41–59

Article  CAS  Google Scholar 

Atay Y, Koc I, Babaoglu I and Kodaz H 2017 Community detection from biological and social networks: A comparative analysis of metaheuristic algorithms. Appl. Soft Comput. 50 194–211

Article  Google Scholar 

Bharadhwaj, VS, Mubeen, S, Sargsyan, A, et al. 2022 Integrative analysis to identify shared mechanisms between schizophrenia and bipolar disorder and their comorbidities. Prog. Neuro. Psychopharmacol. Biol. Psychiatry 122 110688

Blondel VD, Guillaume J, Lambiotte R, et al. 2008 Fast unfolding of communities in large networks. J. Stati. Mech. 2008 P10008

Article  Google Scholar 

Calderer G and Kuijjer M L 2021 Community detection in large-scale bipartite biological networks. Front. Genet. 520.

Chen Y, Lun AT and Smyth GK 2016 From reads to genes to pathways: differential expression analysis of rna-seq experiments using rsubread and the edger quasi-likelihood pipeline. F1000Research 5 1438

Clauset A, Newman ME and Moore C 2004 Finding community structure in very large networks. Phys. Rev. E 70 066111

Article  Google Scholar 

Cui Z, Meng X, Zhuang S, et al. 2020 Schizophrenia, bipolar disorder, and alzheimer’s disease are not causal factors of bone mineral density: a mendelian randomization analysis. Calcif. Tissue Int. 106 131–146

Article  CAS  PubMed  Google Scholar 

Dean OM, den Buuse Mv, Bush A, et al. 2009 A role for glutathione in the pathophysiology of bipolar disorder and schizophrenia? animal models and relevance to clinical practice. Curr. Med. Chem. 16 2965–2976

Debnath M and Berk M 2014 Th17 pathway-mediated immunopathogenesis of schizophrenia: mechanisms and implications. Schizophr. Bull. 40 1412–1421

Article  PubMed  PubMed Central  Google Scholar 

Deka RK, Bhattacharyya DK and Kalita JK 2019 Active learning to detect ddos attack using ranked features. Comput. Commun. 145 203–222

Article  Google Scholar 

Del Grande C, Galli L, Schiavi E, et al. 2017 Is toxoplasma gondii a trigger of bipolar disorder? Pathogens 6 3

Article  PubMed  PubMed Central  Google Scholar 

Dickerson F, Jones-Brando L, Ford G, et al. 2019 Schizophrenia is associated with an aberrant immune response to epstein-barr virus. Schizophr. Bull. 45 1112–1119

Article  PubMed  Google Scholar 

do Prado CH, Rizzo LB, Wieck A, et al. 2013 Reduced regulatory t cells are associated with higher levels of th1/th17 cytokines and activated mapk in type 1 bipolar disorder. Psychoneuroendocrinology 38 667–676

Egbujo CN, Sinclair D and Hahn C 2016 Dysregulations of synaptic vesicle trafficking in schizophrenia. Curr. Psychiatry Rep. 18 1–10

Article  Google Scholar 

Frydecka D, Misiak B, Pawlak-Adamska E, et al. 2015 Sex differences in tgfb-\(\beta\) signaling with respect to age of onset and cognitive functioning in schizophrenia. Neuropsychiat. Dis. Treat. 11 575

PubMed  PubMed Central  Google Scholar 

Fuglewicz AJ, Piotrowski P and Stodolak A 2017 Relationship between toxoplasmosis and schizophrenia: a review. Adv. Clin. Exp. Med. 26 1031–1036

Article  PubMed  Google Scholar 

Fujii T, Hattori K, Miyakawa T, et al. 2017 Metabolic profile alterations in the postmortem brains of patients with schizophrenia using capillary electrophoresis-mass spectrometry. Schizophr. Res. 183 70–74

Article  PubMed  Google Scholar 

Galvan G and Agarwal J 2018 Community detection in action: Identification of critical elements in infrastructure networks. J. Infrastruct. Syst. 24 04017,046

Article  Google Scholar 

George R, Shujaee K, Kerwat M, et al. 2020 A comparative evaluation of community detection algorithms in social networks. Procedia Comput. Sci 171 1157–1165

Article  Google Scholar 

Guidotti A, Auta J, Davis JM, et al. 2005 Gabaergic dysfunction in schizophrenia: new treatment strategies on the horizon. Psychopharmacology 180 191–205

Article  CAS  PubMed  Google Scholar 

Hoque N, Bhattacharyya DK and Kalita JK 2016 A novel measure for low-rate and high-rate ddos attack detection using multivariate data analysis. In Eight International Conference on Communication Systems and Networks (COMSNETS), IEEE. pp 1–2.

Jadhav S and Greenberg ML 2014 Harnessing the power of yeast to elucidate the role of sphingolipids in metabolic and signaling processes pertinent to psychiatric disorders. Clin. Lipidol. 9 533–551

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jiang D, Tang C and Zhang A 2004 Cluster analysis for gene expression data: a survey. IEEE Trans. Knowl. Data Eng. 16 1370–1386

Article  Google Scholar 

Kao L, Lin H and Lee H 2019 Inflammatory bowel disease and bipolar disorder: A population-based cross-sectional study. J. Affect. Disord. 247 120–124

Article  PubMed  Google Scholar 

Knight HM, Pickard BS, Maclean A, et al. 2009 A cytogenetic abnormality and rare coding variants identify abca13 as a candidate gene in schizophrenia, bipolar disorder, and depression. Am. J. Hum. Gene. 85 833–846

Article  CAS  PubMed  Google Scholar 

Knowles EE, Meikle PJ, Huynh K, et al. 2017 Serum phosphatidylinositol as a biomarker for bipolar disorder liability. Bipolar Disord. 19 107–115

Article  CAS  PubMed  PubMed Central  Google Scholar 

Langfelder P and Horvath S 2008 Wgcna: an r package for weighted correlation network analysis. BMC Bioinform. 9 1–13

Article  Google Scholar 

Love MI, Huber W and Anders S 2014 Moderated estimation of fold change and dispersion for rna-seq data with deseq2. Genome Biol. 15 1–21

Article  Google Scholar 

McCarthy DJ, Chen Y and Smyth GK 2012 Differential expression analysis of multifactor rna-seq experiments with respect to biological variation. Nucleic Acids Res. 40 4288–4297

Article  CAS  PubMed  PubMed Central  Google Scholar 

McCarthy NS, Melton PE, Ward SV, et al. 2017 Exome array analysis suggests an increased variant burden in families with schizophrenia. Schizophr. Res. 185 9–16

Article  PubMed  Google Scholar 

Middleton FA, Mirnics K, Pierri JN, et al. 2002 Gene expression profiling reveals alterations of specific metabolic pathways in schizophrenia. J. Neurosci. 22 2718–2729

Article  CAS  PubMed  Google Scholar 

Molina V, Papiol S, Sanz J, et al. 2011 Convergent evidence of the contribution of tp53 genetic variation (pro72arg) to metabolic activity and white matter volume in the frontal lobe in schizophrenia patients. Neuroimage 56 45–51

Article  CAS  PubMed  Google Scholar 

Naik D, Ramesh D, Gandomi AH et al. 2022 Parallel and distributed paradigms for community detection in social networks: A methodological review. Expert Syst. Appl. 187 115956

Article  Google Scholar 

Narayanan T, Gersten M, Subramaniam S, et al. 2011 Modularity detection in protein-protein interaction networks. BMC Res. Notes 4 1–6

Article  Google Scholar 

Narayanan T and Subramaniam S 2011 Community detection in biological networks using a variational Bayes approach. BICoB, 61–66.

Newman ME 2004 Detecting community structure in networks. Eur. Phys. J. B 38 321–330

Article  CAS  Google Scholar 

Newman ME 2006 Finding community structure in networks using the eigenvectors of matrices. Phys. Rev. E 74 036104

Article  CAS  Google Scholar 

Newman ME and Girvan M 2004 Finding and evaluating community structure in networks. Phys. Rev. E 69 026,113

Article 

Comments (0)

No login
gif