Aiello D, Guarnaccia V, Vitale A, LeBlanc N, Shishkoff N, Polizzi G (2022) Impact of Calonectria diseases on ornamental horticulture: diagnosis and control strategies. Plant Dis 106(7):1773–1787. https://doi.org/10.1094/PDIS-11-21-2610-FE

Article  CAS  PubMed  Google Scholar 

Alfenas RF, Lombard L, Pereira OL, Alfenas AC, Crous PW (2015) Diversity and potential impact of Calonectria species in Eucalyptus plantations in Brazil. Stud Mycol 80(1):89–130. https://doi.org/10.1016/j.simyco.2014.11.002

Article  CAS  PubMed  PubMed Central  Google Scholar 

Booth TH (2013) Eucalypt plantations and climate change. For Ecol Manag 301:28–34. https://doi.org/10.1016/j.foreco.2012.04.004

Article  Google Scholar 

Bose R, Pandey S, Joshi P, Banerjee S, Pandey A, Bhandari MS (2020) First report of Calonectria cerciana causing leaf blight of Eucalyptus in northern India. For Pathol 51(1):12658. https://doi.org/10.1111/efp.12658

Article  Google Scholar 

Bose R, Banerjee S, Negi N, Pandey A, Bhandari MS, Pandey S (2022a) Identification and pathogenicity of Calonectria pseudoreteaudii causing leaf blight of Eucalyptus––a new record for India. Physiol Mol Plant Pathol 122:101917. https://doi.org/10.1016/j.pmpp.2022.101917

Article  CAS  Google Scholar 

Bose R, Banerjee S, Pandey A, Bhandari MS, Barthwal S, Pandey S (2022b) Calonectria leaf blight of Eucalyptus: a global review. Ann Appl Biol 182(1):6–28. https://doi.org/10.1111/aab.12800

Article  CAS  Google Scholar 

Bruen TC, Philippe H, Bryant D (2006) A simple and robust statistical test for detecting the presence of recombination. Genet 172(4):2665–2681. https://doi.org/10.1534/genetics.105.048975

Article  CAS  Google Scholar 

Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous Ascomycetes. Mycol 91(3):553–556. https://doi.org/10.1080/00275514.1999.12061051

Article  CAS  Google Scholar 

Chen Q, Guo W, Feng L, Ye X, Xie W, Huang X, Liu J (2015) Transcriptome and proteome analysis of Eucalyptus infected with Calonectria pseudoreteaudii. J Proteom 115:117–131. https://doi.org/10.1016/j.jprot.2014.12.008

Article  CAS  Google Scholar 

Chernomor O, Von Haeseler A, Minh BQ (2016) Terrace aware data structure for phylogenomic inference from supermatrices. Sys Biol 65(6):997–1008. https://doi.org/10.1093/sysbio/syw037

Article  Google Scholar 

Crous PW (2002) Taxonomy and pathology of Cylindrocladium (Calonectria) and allied genera. APS Press, St. Paul, Minnesota, USA

Google Scholar 

Crous PW, Janse BJH, Victor D et al (1993) Characterization of some Cylindrocladium species with three-septate conidia using morphology, isozyme banding patterns and DNA polymorphisms. Syst Appl Microbiol 16:266–273

Article  CAS  Google Scholar 

Crous PW, Groenewald JZ, Risede JM et al (2004) Calonectria species and their Cylindrocladium anamorphs: species with sphaeropedunculate vesicles. Stud Mycol 50:415–430

Google Scholar 

Crous PW, Hernández-Restrepo M, Schumacher RK, Cowan DA, Maggs-Kölling E (2021) New and interesting fungi. Fung Syst Evol 7:255–343. https://doi.org/10.3114/fuse.2021.07.13

Article  CAS  Google Scholar 

de Melo MP, de Sousa MS, de Souza Soares PP, Mesquita NLS, Santos A, de Novaes QS, Alves VCS, Bezerra JL, Bezerra JDP (2024) First report Calonectria hawksworthii as an aetiological agent of fruit rot of cocoa in Brazil. J Phytopathol 172(2):13305. https://doi.org/10.1111/jph.13305

Article  Google Scholar 

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evol 39(4):783–791. https://doi.org/10.2307/2408678

Article  Google Scholar 

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59(3):307–321. https://doi.org/10.1093/sysbio/syq010

Article  CAS  PubMed  Google Scholar 

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In Nucleic Acids Symp Ser 41:95–98

CAS  Google Scholar 

Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23(2):254–267. https://doi.org/10.1093/molbev/msj030

Article  CAS  PubMed  Google Scholar 

Kalyaanamoorthy S, Minh BQ, Wong TK, Von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods 14(6):587–589. https://doi.org/10.1038/nmeth.4285

Article  CAS  PubMed  PubMed Central  Google Scholar 

Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kulkarni HD (2014) Eucalypt improvement at ITC. In: Bhojvaid P, Kaushik S, Barthwal S (eds) Eucalypts in India. ENVIS Center of Forestry, India, pp 149–184

Google Scholar 

Liang X, Wang Q, Chen S (2023) Phylogeny, morphology, distribution, and pathogenicity of seven Calonectria species from leaf-blighted Eucalyptus in Hainan Island, China. Plant Dis 107(9):2579–2605. https://doi.org/10.1094/PDIS-12-22-2802-RE

Article  CAS  PubMed  Google Scholar 

Liu L, Chen S (2022) Pathogenicity of six Calonectria species isolated from five soil layers in a Eucalyptus plantation. J Phytopathol 170:445–452. https://doi.org/10.1111/jph.13096

Article  CAS  Google Scholar 

Liu D, Coloe S, Baird R, Pedersen, (2000) Rapid mini-preparation of fungal DNA for PCR. J Clin Microbiol 38(1):471–471. https://doi.org/10.1128/jcm.38.1.471-471.2000

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu Q, Li J, Wingfield MJ, Duong TA, Wingfield BD, Crous PW, Chen SF (2020) Reconsideration of species boundaries and proposed DNA barcodes for Calonectria. Stud Mycol 97(1):100106–100106. https://doi.org/10.1016/j.simyco.2020.08.001

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu Q, Wingfield MJ, Duong TA, Wingfield BD, Chen S (2024) Diversity of calonectria species from leaves and soils in diseased southern China Eucalyptus plantation. Fungal Biol 128(6):2007–2021. https://doi.org/10.1016/j.funbio.2024.07.007

Liu Q, Wingfield MJ, DuongTA WBD, Chen S (2022) Diversity and distribution of Calonectria species from plantation and forest soils in Fujian Province, China. J Fungi 8(8):811. https://doi.org/10.3390/jof8080811

Article  CAS  Google Scholar 

Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010a) Species concepts in Calonectria (Cylindrocladium). Stud Mycol 66:1–13. https://doi.org/10.3114/sim.2010.66.01

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010b) Phylogeny and systematics of the genus Calonectria. Stud Mycol 66:31–69. https://doi.org/10.3114/sim.2010.66.03

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lombard L, Zhou XD, Crous PW et al (2010c) Calonectria species associated with cutting rot of Eucalyptus. Persoonia 24:1–11

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lombard L, Crous PW, Wingfield BD, Wingfield MJ (2010d) Multigene phylogeny and mating tests reveal three cryptic species related to Calonectria pauciramosa. Stud Mycol 66:15–30. https://doi.org/10.3114/sim.2010.66.02

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lombard L, Chen SF, Mou X et al (2015) New species, hyper-diversity and potential importance of Calonectria spp. from Eucalyptus in South China. Stud Mycol 80:151–188

Article  CAS  PubMed  PubMed Central  Google Scholar